CDS

Accession Number TCMCG027C45887
gbkey CDS
Protein Id YP_009186159.1
Location complement(join(22887..24512,25360..25791))
Gene rpoC1
GeneID 26380780
Organism Juglans regia
locus_tag AT063_gp075

Protein

Length 685aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA304827
db_source NC_028617.1
Definition RNA polymerase beta' subunit (chloroplast) [Juglans regia]
Locus_tag AT063_gp075

EGGNOG-MAPPER Annotation

COG_category K
Description rna polymerase
KEGG_TC -
KEGG_Module M00183        [VIEW IN KEGG]
KEGG_Reaction R00435        [VIEW IN KEGG]
R00441        [VIEW IN KEGG]
R00442        [VIEW IN KEGG]
R00443        [VIEW IN KEGG]
KEGG_rclass RC02795        [VIEW IN KEGG]
BRITE br01611        [VIEW IN KEGG]
ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K03043        [VIEW IN KEGG]
EC 2.7.7.6        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00230        [VIEW IN KEGG]
ko00240        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko03020        [VIEW IN KEGG]
map00230        [VIEW IN KEGG]
map00240        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map03020        [VIEW IN KEGG]
GOs GO:0000428        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003899        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006354        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016779        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034062        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0097747        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATTGATCGGTATAAACATCAACAACTCCGAATTGGATCAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAATCCTACCCAATGGGGAGATAGTTGGAGAGGTCAAAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGTGGGATTTGCGCTTGTGGAAATTATCGAGTAATCGGGGATGAAAAAGAAGACCCGAAATCTTGTGAACAATGCGGAGTCGAATTTTTGGATTCTCGGATACGAAGATACCAAATGGGCTATATCAAACTGGCATGTCCAGTAACTCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATTGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGGCTAGTATACTGCGATTACCCAAATTTTTCTTTTGCTAGACCCATAGCTAAAAAACCTACTTTCTTACGATTACGAGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTCTTTACTACGCAGGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCGGGTGCTATCCGAGAACAATTAGCCGATCTGGATTTGCGAATTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGGGACGAAGGGTCCGCGGATAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGCATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCCATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTTTATAGAAGAGTTATTTATCGGAACAATACTCTTATCGATCTATTAACAACAAGTAGATCTACGCCAGGGGAGTTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCGAGGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTCGGATGTAATTGAAGGTAAAGAGGGAAGATTTCGTGAGACTCTCCTTGGTAAACGGGTCGATTATTCGGGTCGTTCCGTTATTGTCGTAGGGCCCTTGCTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAACTTTTCCAACCATTTGTAATTCGGGGTCTAATTAGACAACATCTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGAGAAAAAGAAGCGATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCACCCCATATTACTGAATCGAGCGCCTACCCTGCATAGATTAGGCATACAGGCATTCCAACCCATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGATTTTGATGGGGATCAAATGGCGGTTCATGTACCTTTATCTTTGGAGGCTCAAGCGGAGGCTCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCCATTGCCCTACCAACCCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGAAATCGCCGAGGTATTTGTGCAAATAGGTATAATCCATGTAATCGCAGAAATTCTCAAAAAAAAAAAATGGACGACAATAGCTATAAATATACGAAAGAAAAAGAACCCTTTTTTTGTAATTCTTATGATGTAATTGGAGCTTATCGTCAGAAAAGGATCAATTTAGATAATCCTTTGTGGCTTCGGTGGCAACTAGATCAACGCGTTATTGCTTCAAGAGAAGCTCCTATCGAAGTTCACTATGAATCTTTGGGTAATTATCATGAGATTTATGAGCACTACCTAATAGTAAGAAGTATAAAAAAAGAGATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATTGAAGAAGCTATACAAGGGTTTTGCCGGACCTGCTCATATGGTACCTAA
Protein:  
MIDRYKHQQLRIGSVSPQQISAWANKILPNGEIVGEVKKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKSCEQCGVEFLDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGDEGSADNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPRRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPLLSLHRCGLPREIAIELFQPFVIRGLIRQHLASNIGVAKSKIREKEAIVWEILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPIALPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQKKKMDDNSYKYTKEKEPFFCNSYDVIGAYRQKRINLDNPLWLRWQLDQRVIASREAPIEVHYESLGNYHEIYEHYLIVRSIKKEILCIYIRTTVGHISLYREIEEAIQGFCRTCSYGT